Originally I had planned to just buy a new after market head unit for my car, do to its lack of an AXU input for my iPod, however after seeing nothing within my price range that was decent looking, I realized that I may have been on the wrong track. While doing some research, I stumbled upon this forum posting about adding an AUX input to an old car tape deck. After digging some more on this topic I found that people have been successful with hijacking both the AM/FM and CD input on stereo circuits. The CD methods seemed like a bad idea due to needing a silent cd to play constantly, which is just asking to wear out the stereo cd drive. So I went with hijacking the FM audio out pins of the stereo. The interesting part about using the AM/FM method is that due to the Auto Gain Control built in, when a MP3 player is connected, its stronger signal seems to overrides the AM/FM on the board and effectively shuts it off without any extra effort on your part. From what I have read, this seems to be the case with most car stereos, however your results may vary.
Here is a good place for the standard warning: I did this project knowing it could potentially destroy the stereo and/or the mp3 player, if you attempt the same thing or something similar you face the same risks. Do not blame me if you break anything by following my information or pictures, I express no warrantee on this information's correctness or usability.
After testing and finding out that this did indeed work, I drilled a hole in the back of the stereo and added a 1/8 inch plug and then ran a short shielded audio cable to the pins I used in my test. The board picture above has the final wiring, which pokes out of the side and is soldered to the correct pins coming from the separate AM/FM board and ground which is a larger solder point connecting to the metal housing. By using a shielded cable inside the radio, it will prevent any extra interference due to the wire stretching across the board from the back panel. After doing one final check, I reassembled the stereo, now with its new AUX plug. Finally, I put together a separate cable to plug into this AUX port and run it to a more convent location in the center console.
The wire runs down from the back of the stereo and connects to another 1/8 inch plug from which I can easily plug in an mp3 player or another other audio device. After making sure everything was in order I snapped all the console panels back into place leaving just the new 1/8 inch port left in view. This is nice, because it means that there is no obvious indication that the stereo is no longer stock, making it a far less likely target for theft, not that the radio is easy to get out to begin with.